+ added information on cut positions of spliced reads
[qpalma.git] / scripts /
2008-04-14 fabio+ added information on cut positions of spliced reads
2008-04-09 fabio+ added first version of the heuristic for the mapping...
2008-04-07 fabiominor changes in the dataset compilation and the evalua...
2008-03-20 fabio+ minor changes in qpalma_main to take into accout...
2008-03-20 fabio+ added function to create tex table from results
2008-03-20 fabio+ minor changes in Evaluation an soap remapping wrapper
2008-03-19 fabio+ added script to automatically perform alignment using...
2008-03-18 fabio+ added splice site score exception to training/prediction
2008-03-17 fabio+ removed duplicated code
2008-03-14 fabio+ training works,
2008-03-12 fabio+ fixed nasty index bugs in the when creating the label...
2008-03-11 fabio+ now using the new interval query interface
2008-03-10 fabio+ fixed bug in the index calculation of donor/acceptor...
2008-03-07 fabio+ changed training method to work with new dataset...
2008-03-06 fabio+ refactored compile dataset -> removed remaining redun...
2008-03-05 fabio+ refactored code further
2008-02-28 fabio+ extended scripts
2008-02-27 fabio+ minor changes
2008-02-26 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-02-26 fabio+ first running version of Evaluation script
2008-02-25 fabio+ performed some further refactoring
2008-02-25 fabio+ did some refactoring to reduce duplicated code
2008-02-25 fabio+ dataset size is smaller now (just storing indices).
2008-02-21 fabio+ added use of all remapped possibilities of a given...
2008-02-21 fabio+ fixed bug in the check for aligned dna fragments...
2008-02-21 fabio+ refactored code of dataset generation method
2008-02-18 fabio+ added code to allow for configuration
2008-02-12 fabio+ small script for plotting fraction of wrong reads...
2008-02-11 fabio+ model selection scripts are ready
2008-02-11 fabio+ added minor functionality pprinting ...
2008-02-11 fabio+ added basic scripts to generate runs for an experiment
2008-02-11 fabio+ added scripts for model selection on the cluster
2008-02-10 fabio+ changed filter behavior (tendency towards smaller...
2008-02-10 fabio+ fixed a bug in the filtering (forgot to disable remov...
2008-02-09 fabio+ modified dataset generation in order to recalculate...
2008-02-08 fabio+ fixed bug in the computeSpliceAlign... function
2008-02-08 fabio+ minor changes to filterReads
2008-02-06 fabio+ resolved an issue with the memory mapping in filterReads
2008-02-06 fabio+ rearranged code
2008-02-05 fabio+ extended dataset compilation function
2008-02-05 fabio+ minor bugfixes in the compile_dataset script
2008-02-04 fabio+ minor changes
2008-02-04 fabio+ modified filtering of reads
2008-02-02 fabio+ added script to generate datasets
2008-01-31 fabio+ extended evaluation function to return positionwise...
2008-01-28 fabio+ removed duplicated code
2008-01-25 fabio+ renamed files
2008-01-25 fabio+ fix
2008-01-25 fabio+ renaming business
2008-01-25 fabiomerged training/prediction scripts
2008-01-25 fabio+ fix development stage before doing some refactoring
2008-01-25 fabio+ added exons read boundary output to filterReads output
2008-01-24 fabio+ minor fixes
2008-01-24 fabio+ resolved some index bugs concerning the intron bounda...
2008-01-23 fabio+ added splicesite scores to training
2008-01-23 fabio+ minor mods
2008-01-23 fabio+ changed output in the filterReads
2008-01-23 fabio+ restored functionality
2008-01-23 fabio+ svn file moving
2008-01-23 fabioannoying svn business