qpalma.git
11 years ago+ removed obsolete code
fabio [Sun, 11 May 2008 19:04:09 +0000 (19:04 +0000)]
+ removed obsolete code
+ changed dataset loading/processing

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8979 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ removed lot of redundant/old code from the dataset generation functions
fabio [Sun, 11 May 2008 12:07:20 +0000 (12:07 +0000)]
+ removed lot of redundant/old code from the dataset generation functions
TODO
- think about faster filtered reads parser

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8978 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ fix changes we made so far
fabio [Tue, 22 Apr 2008 08:44:58 +0000 (08:44 +0000)]
+ fix changes we made so far
+ right after final ECCB submission

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8751 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ Aaaarghh found stupid bug in the parser (Case statement of "one key - n elements...
fabio [Mon, 21 Apr 2008 03:31:59 +0000 (03:31 +0000)]
+ Aaaarghh found stupid bug in the parser (Case statement of "one key - n elements" was wrong)

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8720 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ support dangling end for unspliced reads in computeSpliceAlignWithQ
fabio [Sat, 19 Apr 2008 15:37:04 +0000 (15:37 +0000)]
+ support dangling end for unspliced reads in computeSpliceAlignWithQ
+ made parsers a bit faster by using mmap

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8701 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ added faster evaluation function
fabio [Sat, 19 Apr 2008 15:35:52 +0000 (15:35 +0000)]
+ added faster evaluation function
+ in PipelineHeuristic fixed bug in returning alternatives
+ corrected if statements in Lookup

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8700 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ fixed some index bugs in the evaluation
fabio [Sat, 19 Apr 2008 01:54:03 +0000 (01:54 +0000)]
+ fixed some index bugs in the evaluation

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8698 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ using new parsers now
fabio [Fri, 18 Apr 2008 23:52:29 +0000 (23:52 +0000)]
+ using new parsers now
+ store only minimum amount of information needed to perform prediction

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8697 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ changed code for prediction -> easier and faster
fabio [Fri, 18 Apr 2008 23:51:15 +0000 (23:51 +0000)]
+ changed code for prediction -> easier and faster

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8696 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ optimized parsers
fabio [Fri, 18 Apr 2008 21:39:31 +0000 (21:39 +0000)]
+ optimized parsers

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8695 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ fixed missing newlines in output
fabio [Fri, 18 Apr 2008 17:41:38 +0000 (17:41 +0000)]
+ fixed missing newlines in output

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8691 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ changed prediction
fabio [Fri, 18 Apr 2008 17:21:27 +0000 (17:21 +0000)]
+ changed prediction

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11 years ago+ pipeline parse is much faster now,
fabio [Fri, 18 Apr 2008 14:37:32 +0000 (14:37 +0000)]
+ pipeline parse is much faster now,
- convert the other parsers too

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8686 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agominor changes of paths
fabio [Fri, 18 Apr 2008 12:59:28 +0000 (12:59 +0000)]
minor changes of paths

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11 years ago+ Lookup table checked for pos. strand
fabio [Fri, 18 Apr 2008 12:56:36 +0000 (12:56 +0000)]
+ Lookup table checked for pos. strand

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11 years ago+ added wrapper class for prefetching of genomic sequences and splice scores
fabio [Fri, 18 Apr 2008 12:15:49 +0000 (12:15 +0000)]
+ added wrapper class for prefetching of genomic sequences and splice scores

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raetsch [Fri, 18 Apr 2008 12:13:38 +0000 (12:13 +0000)]
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11 years agooptimized heuristic
raetsch [Fri, 18 Apr 2008 12:07:09 +0000 (12:07 +0000)]
optimized heuristic

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11 years ago+ saving results in two files (spliced/unspliced)
fabio [Fri, 18 Apr 2008 10:43:28 +0000 (10:43 +0000)]
+ saving results in two files (spliced/unspliced)

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11 years agoheuristic seems to work well
raetsch [Fri, 18 Apr 2008 10:25:40 +0000 (10:25 +0000)]
heuristic seems to work well

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8668 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ added if statement to create numpy mat for unspliced reads
fabio [Fri, 18 Apr 2008 09:52:08 +0000 (09:52 +0000)]
+ added if statement to create numpy mat for unspliced reads

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fabio [Fri, 18 Apr 2008 09:25:38 +0000 (09:25 +0000)]
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11 years agoadded file
fabio [Fri, 18 Apr 2008 09:24:09 +0000 (09:24 +0000)]
added file

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11 years agomissing files
fabio [Fri, 18 Apr 2008 09:22:26 +0000 (09:22 +0000)]
missing files
A    dyn_prog/debug_tools.cpp

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11 years ago+ added solver wrapper for cvxopt
fabio [Fri, 18 Apr 2008 09:12:12 +0000 (09:12 +0000)]
+ added solver wrapper for cvxopt
+ modified parser

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8659 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agoanother module init
fabio [Fri, 18 Apr 2008 09:10:38 +0000 (09:10 +0000)]
another module init

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11 years agomodule init
fabio [Fri, 18 Apr 2008 09:09:40 +0000 (09:09 +0000)]
module init

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raetsch [Fri, 18 Apr 2008 09:00:32 +0000 (09:00 +0000)]
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11 years ago+ a slighlty better way to create a big dataset
fabio [Fri, 18 Apr 2008 08:58:03 +0000 (08:58 +0000)]
+ a slighlty better way to create a big dataset

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raetsch [Fri, 18 Apr 2008 08:57:22 +0000 (08:57 +0000)]
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fabio [Fri, 18 Apr 2008 08:47:29 +0000 (08:47 +0000)]
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raetsch [Fri, 18 Apr 2008 08:41:10 +0000 (08:41 +0000)]
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fabio [Fri, 18 Apr 2008 08:33:30 +0000 (08:33 +0000)]
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11 years agoworks soso
fabio [Thu, 17 Apr 2008 22:28:15 +0000 (22:28 +0000)]
works soso

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raetsch [Thu, 17 Apr 2008 22:01:31 +0000 (22:01 +0000)]
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raetsch [Thu, 17 Apr 2008 22:00:19 +0000 (22:00 +0000)]
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raetsch [Thu, 17 Apr 2008 21:58:46 +0000 (21:58 +0000)]
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raetsch [Thu, 17 Apr 2008 21:58:24 +0000 (21:58 +0000)]
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raetsch [Thu, 17 Apr 2008 21:52:35 +0000 (21:52 +0000)]
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raetsch [Thu, 17 Apr 2008 21:49:09 +0000 (21:49 +0000)]
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raetsch [Thu, 17 Apr 2008 21:43:04 +0000 (21:43 +0000)]
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raetsch [Thu, 17 Apr 2008 21:42:28 +0000 (21:42 +0000)]
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fabio [Thu, 17 Apr 2008 21:42:19 +0000 (21:42 +0000)]
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raetsch [Thu, 17 Apr 2008 21:34:58 +0000 (21:34 +0000)]
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raetsch [Thu, 17 Apr 2008 21:33:27 +0000 (21:33 +0000)]
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raetsch [Thu, 17 Apr 2008 21:32:00 +0000 (21:32 +0000)]
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raetsch [Thu, 17 Apr 2008 21:29:07 +0000 (21:29 +0000)]
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raetsch [Thu, 17 Apr 2008 21:27:28 +0000 (21:27 +0000)]
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raetsch [Thu, 17 Apr 2008 21:24:17 +0000 (21:24 +0000)]
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raetsch [Thu, 17 Apr 2008 21:23:37 +0000 (21:23 +0000)]
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raetsch [Thu, 17 Apr 2008 21:22:59 +0000 (21:22 +0000)]
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raetsch [Thu, 17 Apr 2008 21:09:50 +0000 (21:09 +0000)]
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raetsch [Thu, 17 Apr 2008 21:05:14 +0000 (21:05 +0000)]
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raetsch [Thu, 17 Apr 2008 21:04:53 +0000 (21:04 +0000)]
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raetsch [Thu, 17 Apr 2008 21:03:55 +0000 (21:03 +0000)]
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raetsch [Thu, 17 Apr 2008 21:01:18 +0000 (21:01 +0000)]
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raetsch [Thu, 17 Apr 2008 21:00:57 +0000 (21:00 +0000)]
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raetsch [Thu, 17 Apr 2008 20:56:40 +0000 (20:56 +0000)]
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raetsch [Thu, 17 Apr 2008 20:46:45 +0000 (20:46 +0000)]
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raetsch [Thu, 17 Apr 2008 20:44:25 +0000 (20:44 +0000)]
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raetsch [Thu, 17 Apr 2008 20:43:00 +0000 (20:43 +0000)]
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raetsch [Thu, 17 Apr 2008 20:40:28 +0000 (20:40 +0000)]
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11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8621 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:38:58 +0000 (20:38 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8621 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8620 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:38:27 +0000 (20:38 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8620 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8619 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:24:43 +0000 (20:24 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8619 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8618 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:23:56 +0000 (20:23 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8618 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8617 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:22:55 +0000 (20:22 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8617 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8616 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:21:22 +0000 (20:21 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8616 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8615 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:21:07 +0000 (20:21 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8615 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8614 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:08:17 +0000 (20:08 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8614 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8613 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:06:51 +0000 (20:06 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8613 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8612 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:06:25 +0000 (20:06 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8612 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8611 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:05:44 +0000 (20:05 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8611 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8610 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:04:20 +0000 (20:04 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8610 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8609 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:03:42 +0000 (20:03 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8609 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8608 e1793c9e...
raetsch [Thu, 17 Apr 2008 20:03:11 +0000 (20:03 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8608 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8607 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:44:14 +0000 (19:44 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8607 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8606 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:43:29 +0000 (19:43 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8606 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agounspliced should work
raetsch [Thu, 17 Apr 2008 19:41:13 +0000 (19:41 +0000)]
unspliced should work

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8605 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8604 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:38:50 +0000 (19:38 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8604 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8603 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:37:58 +0000 (19:37 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8603 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8602 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:37:31 +0000 (19:37 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8602 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8601 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:36:40 +0000 (19:36 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8601 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8600 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:36:17 +0000 (19:36 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8600 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8599 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:34:52 +0000 (19:34 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8599 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8598 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:27:34 +0000 (19:27 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8598 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8597 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:26:10 +0000 (19:26 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8597 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8596 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:25:04 +0000 (19:25 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8596 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8595 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:23:55 +0000 (19:23 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8595 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8594 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:22:59 +0000 (19:22 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8594 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8593 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:22:29 +0000 (19:22 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8593 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8592 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:21:49 +0000 (19:21 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8592 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8591 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:18:56 +0000 (19:18 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8591 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8590 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:16:29 +0000 (19:16 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8590 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agogit-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8589 e1793c9e...
raetsch [Thu, 17 Apr 2008 19:14:47 +0000 (19:14 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8589 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years agofirst version of faster heuristic
raetsch [Thu, 17 Apr 2008 19:10:14 +0000 (19:10 +0000)]
first version of faster heuristic

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8588 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ updated filtering
fabio [Thu, 17 Apr 2008 18:34:18 +0000 (18:34 +0000)]
+ updated filtering
+ some minor changes in parsers and data processing

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8587 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ changes
fabio [Thu, 17 Apr 2008 18:33:36 +0000 (18:33 +0000)]
+ changes

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8586 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ added small script for the evaluation of the first vmatch round
fabio [Thu, 17 Apr 2008 14:26:06 +0000 (14:26 +0000)]
+ added small script for the evaluation of the first vmatch round

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8573 e1793c9e-67f9-0310-80fc-b846ff1f7b36

11 years ago+ changed alignment output format to be more blat-like
fabio [Thu, 17 Apr 2008 09:54:19 +0000 (09:54 +0000)]
+ changed alignment output format to be more blat-like
+ performed prediction to see whether changes are correct

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8561 e1793c9e-67f9-0310-80fc-b846ff1f7b36