fabio [Fri, 20 Jun 2008 12:31:35 +0000 (12:31 +0000)]
+ optimized dataset generation/storage
+ added some assertions
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9694
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 18 Jun 2008 14:50:56 +0000 (14:50 +0000)]
+ cleaning up scripts directory
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9657
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 18 Jun 2008 12:59:28 +0000 (12:59 +0000)]
+ added alignment reconstruction function
+ add script for est2gff processing
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9653
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 16 Jun 2008 14:48:38 +0000 (14:48 +0000)]
+ added two scripts for the psl2gff step
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9622
e1793c9e-67f9-0310-80fc-
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fabio [Sun, 15 Jun 2008 22:01:10 +0000 (22:01 +0000)]
+ saving alignment information now in array container (saves factor 8 memory
requirement)
TODO
+ check for all other places where it could be useful to use array.array instead
of [] (for example quality scores)
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9613
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 12 Jun 2008 12:36:11 +0000 (12:36 +0000)]
+ added selection option for alignment format
+ added pythongrid script for alignment output
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9579
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 11 Jun 2008 15:36:05 +0000 (15:36 +0000)]
+ changed output format of alignment file script to be compatible with est2gff
+ modified PipelineHeuristic to support faster parsers
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9571
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 11 Jun 2008 10:30:14 +0000 (10:30 +0000)]
+ minor changes to support transcriptome data
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9561
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 5 Jun 2008 15:24:51 +0000 (15:24 +0000)]
+ fixed some bugs in the negative strand lookup table
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9406
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 4 Jun 2008 17:49:08 +0000 (17:49 +0000)]
+ extended Lookup object to support negative strand
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9395
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 4 Jun 2008 14:30:17 +0000 (14:30 +0000)]
+ fixed other bug (missing n last entries of the acceptor scores)
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9389
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 4 Jun 2008 10:12:12 +0000 (10:12 +0000)]
+ fixed index error for negative stand queries of splice scores
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9383
e1793c9e-67f9-0310-80fc-
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fabio [Tue, 3 Jun 2008 15:59:42 +0000 (15:59 +0000)]
+ added code for negative strand processing
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9374
e1793c9e-67f9-0310-80fc-
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fabio [Tue, 3 Jun 2008 10:32:05 +0000 (10:32 +0000)]
+ added script to parallelize QPalma heuristic on the cluster
+ added datafile splitting and rejoining method to Utils
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9360
e1793c9e-67f9-0310-80fc-
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fabio [Tue, 3 Jun 2008 08:18:14 +0000 (08:18 +0000)]
+ return value is a tuple now containing the original line as second element
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9352
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 16:57:29 +0000 (16:57 +0000)]
+ added compatiblity to PipelineHeuristic parser
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9342
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 15:34:46 +0000 (15:34 +0000)]
+ removed stupid temp file
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9337
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 15:24:36 +0000 (15:24 +0000)]
+ added VECTOR and MAP mode to ParaParser in order to handle entries with same
ids
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9335
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 14:15:03 +0000 (14:15 +0000)]
+ added some assertions
+ fixed bug for smaller format strings
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9333
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 12:18:51 +0000 (12:18 +0000)]
+ found string splitting bug
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9330
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 11:44:41 +0000 (11:44 +0000)]
+ rewrote some data storage code
+ still have to find pointer-to-entry related problem
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9329
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 09:52:55 +0000 (09:52 +0000)]
+ fix starting point for rewrite of data accession for PipelineHeuristic
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9328
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 2 Jun 2008 07:41:24 +0000 (07:41 +0000)]
+ added generice parser code
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9327
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 12:00:47 +0000 (12:00 +0000)]
+ original reads sequence now has to be reconstructred automatically as we have
no ground truth file anymore
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9309
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 11:59:12 +0000 (11:59 +0000)]
+ added missing modules imports
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9308
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 10:19:53 +0000 (10:19 +0000)]
+ shell script for the heuristic run
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9305
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 10:06:26 +0000 (10:06 +0000)]
+ removed unnecessary numpy dependency
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9304
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 10:04:01 +0000 (10:04 +0000)]
+ added modifications of parser to repo
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9303
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 09:53:36 +0000 (09:53 +0000)]
+ removed files
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9302
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 09:30:59 +0000 (09:30 +0000)]
+ minor changes
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9301
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 09:29:59 +0000 (09:29 +0000)]
+ moved sequence access functions to own module
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9300
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 09:25:43 +0000 (09:25 +0000)]
+ added dataset generation function to dataset specific scripts dir.
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9299
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 09:08:13 +0000 (09:08 +0000)]
+ moved qpalma dataset generation scripts
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9298
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 09:00:10 +0000 (09:00 +0000)]
+ added a script that processes the single lane files to create a full dataset
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9297
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 08:08:20 +0000 (08:08 +0000)]
+ added some more scripts from the dataset processing
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9295
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 30 May 2008 08:06:27 +0000 (08:06 +0000)]
+ added small counting script
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9294
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 26 May 2008 07:13:53 +0000 (07:13 +0000)]
+ minor changes
+ changed data representation a bit
+ moved some code to other modules
+ removed / commented some debugging code lines
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9188
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 21 May 2008 19:43:10 +0000 (19:43 +0000)]
+ added script which draws the coverage bar plots presented in the QPalma paper
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9134
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 21 May 2008 19:42:33 +0000 (19:42 +0000)]
+ changed data loading procedures
+ made functions generic
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9133
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 16 May 2008 07:58:21 +0000 (07:58 +0000)]
+ added missing free for line array
+ added check to ensure consistency with python parser
+ parsing is much faster now
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9044
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 15 May 2008 16:59:59 +0000 (16:59 +0000)]
+ minor modifications
TODO
+ fix bug in the array access (fetch function)
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9040
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 15 May 2008 16:37:57 +0000 (16:37 +0000)]
+ modified module in order to act like a database returning a dictionary of the
line given a particular id
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9039
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 15 May 2008 13:17:09 +0000 (13:17 +0000)]
+ coded alternative implementation using a list per line
+ got rid of qualities scores as they are not needed for evaluation anyways
+ modified check script in order to be able to check dict/line entries
separately
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9027
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 15 May 2008 12:06:01 +0000 (12:06 +0000)]
+ fixed seq size bug
+ added check to ensure that this c code does the same as the old python code
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9024
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 15 May 2008 11:40:10 +0000 (11:40 +0000)]
+ fixed a bug in the sscanf
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9023
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 15 May 2008 10:32:45 +0000 (10:32 +0000)]
+ removed binaries
+ added input conversion for quality array
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9020
e1793c9e-67f9-0310-80fc-
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fabio [Thu, 15 May 2008 10:26:35 +0000 (10:26 +0000)]
+ added python module for reads parsing as plain python code is to slow
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9019
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 14 May 2008 16:23:07 +0000 (16:23 +0000)]
+ take into account multiple hits per unique read
+ change prediction file name to include current set_flag
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9012
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 14 May 2008 16:06:10 +0000 (16:06 +0000)]
+ made original reads file location a parameter for the command line
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9011
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 14 May 2008 15:26:28 +0000 (15:26 +0000)]
+ First fully working version.
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9010
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 14 May 2008 08:13:55 +0000 (08:13 +0000)]
+ changed dataset compiler to take the two different map files into account
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9002
e1793c9e-67f9-0310-80fc-
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fabio [Wed, 14 May 2008 07:43:03 +0000 (07:43 +0000)]
+ first version of a script that uses pythongrid
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9001
e1793c9e-67f9-0310-80fc-
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fabio [Tue, 13 May 2008 14:53:57 +0000 (14:53 +0000)]
+ added configuration variables to main config file
+ extended parameter checking script
+ wrote pipeline framework for vmatch and heuristic steps
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8999
e1793c9e-67f9-0310-80fc-
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fabio [Tue, 13 May 2008 13:31:20 +0000 (13:31 +0000)]
+ sanity checks for the global config file
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8992
e1793c9e-67f9-0310-80fc-
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fabio [Tue, 13 May 2008 11:34:37 +0000 (11:34 +0000)]
+ adapted training method to use new dataset standard
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8984
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 12 May 2008 20:58:54 +0000 (20:58 +0000)]
+ changed dataset representation
+ fixed datatype bug in the numpy exons array
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8980
e1793c9e-67f9-0310-80fc-
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fabio [Sun, 11 May 2008 19:04:09 +0000 (19:04 +0000)]
+ removed obsolete code
+ changed dataset loading/processing
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8979
e1793c9e-67f9-0310-80fc-
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fabio [Sun, 11 May 2008 12:07:20 +0000 (12:07 +0000)]
+ removed lot of redundant/old code from the dataset generation functions
TODO
- think about faster filtered reads parser
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8978
e1793c9e-67f9-0310-80fc-
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fabio [Tue, 22 Apr 2008 08:44:58 +0000 (08:44 +0000)]
+ fix changes we made so far
+ right after final ECCB submission
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8751
e1793c9e-67f9-0310-80fc-
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fabio [Mon, 21 Apr 2008 03:31:59 +0000 (03:31 +0000)]
+ Aaaarghh found stupid bug in the parser (Case statement of "one key - n elements" was wrong)
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8720
e1793c9e-67f9-0310-80fc-
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fabio [Sat, 19 Apr 2008 15:37:04 +0000 (15:37 +0000)]
+ support dangling end for unspliced reads in computeSpliceAlignWithQ
+ made parsers a bit faster by using mmap
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8701
e1793c9e-67f9-0310-80fc-
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fabio [Sat, 19 Apr 2008 15:35:52 +0000 (15:35 +0000)]
+ added faster evaluation function
+ in PipelineHeuristic fixed bug in returning alternatives
+ corrected if statements in Lookup
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8700
e1793c9e-67f9-0310-80fc-
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fabio [Sat, 19 Apr 2008 01:54:03 +0000 (01:54 +0000)]
+ fixed some index bugs in the evaluation
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8698
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 23:52:29 +0000 (23:52 +0000)]
+ using new parsers now
+ store only minimum amount of information needed to perform prediction
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8697
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 23:51:15 +0000 (23:51 +0000)]
+ changed code for prediction -> easier and faster
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8696
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 21:39:31 +0000 (21:39 +0000)]
+ optimized parsers
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8695
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 17:41:38 +0000 (17:41 +0000)]
+ fixed missing newlines in output
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8691
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 17:21:27 +0000 (17:21 +0000)]
+ changed prediction
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8690
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 14:37:32 +0000 (14:37 +0000)]
+ pipeline parse is much faster now,
- convert the other parsers too
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8686
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 12:59:28 +0000 (12:59 +0000)]
minor changes of paths
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8678
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 12:56:36 +0000 (12:56 +0000)]
+ Lookup table checked for pos. strand
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8677
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 12:15:49 +0000 (12:15 +0000)]
+ added wrapper class for prefetching of genomic sequences and splice scores
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8674
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raetsch [Fri, 18 Apr 2008 12:13:38 +0000 (12:13 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8673
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raetsch [Fri, 18 Apr 2008 12:07:09 +0000 (12:07 +0000)]
optimized heuristic
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8671
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 10:43:28 +0000 (10:43 +0000)]
+ saving results in two files (spliced/unspliced)
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8670
e1793c9e-67f9-0310-80fc-
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raetsch [Fri, 18 Apr 2008 10:25:40 +0000 (10:25 +0000)]
heuristic seems to work well
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8668
e1793c9e-67f9-0310-80fc-
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fabio [Fri, 18 Apr 2008 09:52:08 +0000 (09:52 +0000)]
+ added if statement to create numpy mat for unspliced reads
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8665
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fabio [Fri, 18 Apr 2008 09:25:38 +0000 (09:25 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8663
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fabio [Fri, 18 Apr 2008 09:24:09 +0000 (09:24 +0000)]
added file
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8662
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fabio [Fri, 18 Apr 2008 09:22:26 +0000 (09:22 +0000)]
missing files
A dyn_prog/debug_tools.cpp
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8661
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fabio [Fri, 18 Apr 2008 09:12:12 +0000 (09:12 +0000)]
+ added solver wrapper for cvxopt
+ modified parser
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8659
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fabio [Fri, 18 Apr 2008 09:10:38 +0000 (09:10 +0000)]
another module init
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8658
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fabio [Fri, 18 Apr 2008 09:09:40 +0000 (09:09 +0000)]
module init
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8657
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raetsch [Fri, 18 Apr 2008 09:00:32 +0000 (09:00 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8656
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fabio [Fri, 18 Apr 2008 08:58:03 +0000 (08:58 +0000)]
+ a slighlty better way to create a big dataset
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8655
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raetsch [Fri, 18 Apr 2008 08:57:22 +0000 (08:57 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8654
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fabio [Fri, 18 Apr 2008 08:47:29 +0000 (08:47 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8653
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raetsch [Fri, 18 Apr 2008 08:41:10 +0000 (08:41 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8652
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fabio [Fri, 18 Apr 2008 08:33:30 +0000 (08:33 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8651
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fabio [Thu, 17 Apr 2008 22:28:15 +0000 (22:28 +0000)]
works soso
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8650
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raetsch [Thu, 17 Apr 2008 22:01:31 +0000 (22:01 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8649
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raetsch [Thu, 17 Apr 2008 22:00:19 +0000 (22:00 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8648
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raetsch [Thu, 17 Apr 2008 21:58:46 +0000 (21:58 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8647
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raetsch [Thu, 17 Apr 2008 21:58:24 +0000 (21:58 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8646
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raetsch [Thu, 17 Apr 2008 21:52:35 +0000 (21:52 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8645
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raetsch [Thu, 17 Apr 2008 21:49:09 +0000 (21:49 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8644
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raetsch [Thu, 17 Apr 2008 21:43:04 +0000 (21:43 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8643
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raetsch [Thu, 17 Apr 2008 21:42:28 +0000 (21:42 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8642
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fabio [Thu, 17 Apr 2008 21:42:19 +0000 (21:42 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8641
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raetsch [Thu, 17 Apr 2008 21:34:58 +0000 (21:34 +0000)]
git-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8640
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projects / qpalma.git / log