qpalma.git
2008-01-24 fabio+ resolved some index bugs concerning the intron bounda...
2008-01-23 fabio+ added splicesite scores to training
2008-01-23 fabio+ minor mods
2008-01-23 fabio+ changed output in the filterReads
2008-01-23 fabio+ restored functionality
2008-01-23 fabio+ svn file moving
2008-01-23 fabioannoying svn business
2008-01-23 fabio+ some changes concerning filter params
2008-01-23 fabio+ renamed main dir in order to create python module...
2008-01-23 fabio+ moved pythn data tools to new dir
2008-01-23 fabio+ small changes
2008-01-23 fabio+ check in latest changes
2008-01-22 fabio+ fixed bug in the label feature calculation
2008-01-22 fabio+ solved some issues with the data generation
2008-01-22 ongan example shows how to integrate into qpalma
2008-01-21 ongFirst try at splice site scores. Not yet integrated.
2008-01-21 fabio+ added some assertions concerning scores
2008-01-21 fabio+ added prediction script with evaluation functions...
2008-01-21 fabio+ fixed bug in the assertion whether scalar prod +...
2008-01-18 fabio+ added a toy data random generator
2008-01-17 fabio+ minor fixes
2008-01-17 fabio+ minor changes
2008-01-17 fabio+ found feature count bug in the quality scores
2008-01-16 ongused the last value of quality plifs to fill out the...
2008-01-16 fabio+ fixed matchmatrix for the quality case to be a 1x6...
2008-01-16 ongplot the parameter vector in a useful way
2008-01-16 fabio+ some minor fixes
2008-01-16 fabio+ added info file
2008-01-15 fabio+ fixded index bug in feature count
2008-01-15 fabio+ added some assertions
2008-01-15 fabio+ fixed Swig/python double free bug
2008-01-15 fabio+ fixed if/else cases bug in the increaseFeatureCount...
2008-01-14 fabio+ changed interface for decoded plif features -> direct...
2008-01-14 fabio+ disabled don/acc scores properly
2008-01-11 fabio+ modifications and bugfixes
2008-01-11 raetsch*** empty log message ***
2008-01-10 fabio+ fixed some index bugs in the c code
2008-01-09 fabio+ added fasta parser for TAIR7 sequences
2008-01-09 fabio+ restored old filtering functionality -> reads have...
2008-01-08 fabio+ minor changes
2008-01-08 fabio+ added feature calculation for the labels
2008-01-07 fabio+ changed reads combination in order to allow for overl...
2008-01-07 fabio+ parameter transfer to python layer works
2008-01-06 fabio+ added part of the feature calculation for the quality...
2007-12-30 fabio+ incorporated feature count for prb and chastity Plifs...
2007-12-29 fabio+ changed parameter transfer to support array of plifs
2007-12-28 fabio+ changed filter criteria
2007-12-22 fabio+ loosened filtering criterion
2007-12-22 fabio+ found bug which caused ~10 reads of overlap "0"
2007-12-21 fabio+ added missing check for strand orientation
2007-12-20 fabio+ added support for writing in result file
2007-12-20 fabio+ optimized and fixed map file parser
2007-12-20 fabio+ compacted parser code
2007-12-19 fabio+ parser works now with mmap and sscanf
2007-12-19 fabio+ added processing function for reads
2007-12-18 fabio+ wrote faster parser / file processing tools in C
2007-12-17 fabio+ added python parsers for gff and solexa / read files
2007-12-14 fabio+ started to add quality scoring function to C code
2007-12-13 fabio+ started to extend fill_matrix in order to be able...
2007-12-13 fabio+ fixed a parameter name bug in the exporter script
2007-12-12 fabio+ fixed a bug in the C++ interface
2007-12-11 fabio+ added small scripts for EST filtering
2007-12-10 fabio+ added export_param function to export parameters...
2007-12-10 fabio+ fixed some index bugs
2007-12-07 fabio+ removed accidently checked in vim swap files
2007-12-07 fabio+ found index bug in SWIG interface
2007-12-07 fabio+ found bug in SWIG interface dna_len vs. dna_len-1...
2007-12-06 fabio+ changed interface array_function to array_class
2007-12-06 fabio+ changed design
2007-12-05 fabio+ fixed some index bugs in the weights calculation
2007-12-05 fabio+ Extended C/C++ interface to return results easily
2007-12-05 fabio- python code is now checked and complete
2007-12-04 fabio+ removed several index bugs
2007-12-03 fabio+ rewrote C interface for SWIG/Python
2007-12-02 fabio+ using correct interface now
2007-12-01 fabio+ created necessary interfaces
2007-11-30 fabio+ added c code from the palma project
2007-11-30 fabio+ added first converted scripts