qpalma.git
2008-04-17 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschunspliced should work
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschfirst version of faster heuristic
2008-04-17 fabio+ updated filtering
2008-04-17 fabio+ changes
2008-04-17 fabio+ added small script for the evaluation of the first...
2008-04-17 fabio+ changed alignment output format to be more blat-like
2008-04-17 fabio+ extended alignment script
2008-04-16 fabio+ minor modifications to allow for parallel prediction...
2008-04-16 fabio+ added new format for QPalma alignment output
2008-04-16 fabio+ added field to prediction dict
2008-04-14 fabio+ refined creation of alternative alignments
2008-04-14 fabio+ finished first running version of the spliced/unsplic...
2008-04-14 fabio+ added information on cut positions of spliced reads
2008-04-09 fabio+ added first version of the heuristic for the mapping...
2008-04-07 fabiominor changes in the dataset compilation and the evalua...
2008-03-20 fabio+ minor changes in qpalma_main to take into accout...
2008-03-20 fabio+ changes in the main configuration -> no pickled init...
2008-03-20 fabio+ added function to create tex table from results
2008-03-20 fabio+ minor changes in Evaluation an soap remapping wrapper
2008-03-19 fabio+ added script to automatically perform alignment using...
2008-03-18 fabio+ added splice site score exception to training/prediction
2008-03-17 fabio+ removed duplicated code
2008-03-14 fabio+ training works,
2008-03-12 fabio+ fixed mentioned index bugs of the SpliceAlign of...
2008-03-12 fabio+ fixed nasty index bugs in the when creating the label...
2008-03-11 fabio+ now using the new interval query interface
2008-03-10 fabio+ fixed bug in the index calculation of donor/acceptor...
2008-03-07 fabio+ changed training method to work with new dataset...
2008-03-06 fabio+ refactored compile dataset -> removed remaining redun...
2008-03-06 fabio+ fixed index of reads in filterReads
2008-03-05 fabio+ removed some obsolete variables
2008-03-05 fabio+ refactored code further
2008-03-05 fabio+ added small app to ease profiling
2008-02-28 fabio+ extended scripts
2008-02-27 fabio+ minor changes
2008-02-26 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-02-26 fabio+ first running version of Evaluation script
2008-02-25 fabio+ performed some further refactoring
2008-02-25 fabio+ did some refactoring to reduce duplicated code
2008-02-25 fabio+ dataset size is smaller now (just storing indices).
2008-02-21 fabio+ added use of all remapped possibilities of a given...
2008-02-21 fabio+ fixed bug in the check for aligned dna fragments...
2008-02-21 fabio+ refactored code of dataset generation method
2008-02-18 fabio+ added code to allow for configuration
2008-02-12 fabio+ small script for plotting fraction of wrong reads...
2008-02-11 fabio+ model selection scripts are ready
2008-02-11 fabio+ added minor functionality pprinting ...
2008-02-11 fabio+ added basic scripts to generate runs for an experiment
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