+ changed output format of alignment file script to be compatible with est2gff
drwxr-xr-x - ParaParser
drwxr-xr-x - cparser
drwxr-xr-x - dyn_prog
drwxr-xr-x - qpalma
drwxr-xr-x - scripts
drwxr-xr-x - standalone
drwxr-xr-x - tools