Added bootstrap on Pfix
authorFabio Zanini <fabio.zanini@tuebingen.mpg.de>
Fri, 25 Jan 2013 14:40:11 +0000 (15:40 +0100)
committerFabio Zanini <fabio.zanini@tuebingen.mpg.de>
Fri, 25 Jan 2013 14:40:11 +0000 (15:40 +0100)
figures/Bunnik2008_fixmid_syn_ShankanonShanka.pdf
figures/Shankarappa_fix_loss_dt_times.pdf
figures/fixation_probabilities.svg [new file with mode: 0644]
synmut.tex

index ffc0cbb..20e67e6 100644 (file)
Binary files a/figures/Bunnik2008_fixmid_syn_ShankanonShanka.pdf and b/figures/Bunnik2008_fixmid_syn_ShankanonShanka.pdf differ
index 18264ea..8b8da14 100644 (file)
Binary files a/figures/Shankarappa_fix_loss_dt_times.pdf and b/figures/Shankarappa_fix_loss_dt_times.pdf differ
diff --git a/figures/fixation_probabilities.svg b/figures/fixation_probabilities.svg
new file mode 100644 (file)
index 0000000..c645112
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index 604539e..e1710bc 100644 (file)
@@ -207,12 +207,13 @@ to be neutral.
 \label{fig:fixp1}}\\
 \subfloat{\includegraphics[width=0.9\linewidth]{Bunnik2008_fixmid_syn_ShankanonShanka}
 \label{fig:fixp2}}
-\caption{Left panel: time course of loss and fixation of synonymous mutations
- observed in a frequency interval $\nu_0$. The ultimate fraction of synonymous
- mutations that fix as a function of intermediate frequency $\nu_0$ is the
- fixation probability.  Right panel: fixation probability of derived synonymous
+\caption{(Panel A) Time course of loss and fixation of synonymous mutations
+observed in a frequency interval $\nu_0$. The ultimate fraction of synonymous
+mutations that fix as a function of intermediate frequency $\nu_0$ is the
+fixation probability. (Panel B) Fixation probability of derived synonymous
 alleles is strongly suppressed in C2-V5 versus other parts of the {\it env}
-gene, and of nonsynonymous ones. Data from
+gene. The horizontal error bars on the abscissa are bin sizes, the vertical ones
+the standard deviation after 100 patient bootstraps of the data. Data from
 Refs.~\cite{shankarappa_consistent_1999, bunnik_autologous_2008}.}
 \label{fig:fixp}
 \end{center}