Coalescent tree + C2-V5
authorFabio Zanini <fabio.zanini@tuebingen.mpg.de>
Tue, 4 Dec 2012 01:43:35 +0000 (17:43 -0800)
committerFabio Zanini <fabio.zanini@tuebingen.mpg.de>
Tue, 4 Dec 2012 01:43:35 +0000 (17:43 -0800)
figures/Bunnik2008_fixmid_syn_ShankanonShanka.pdf
figures/coalescent_cartoon.svg [new file with mode: 0644]
synmut.tex

index f073fab..e6da81c 100644 (file)
Binary files a/figures/Bunnik2008_fixmid_syn_ShankanonShanka.pdf and b/figures/Bunnik2008_fixmid_syn_ShankanonShanka.pdf differ
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index bf06a0a..5a6e81f 100644 (file)
@@ -151,9 +151,9 @@ frequency (see \figurename~\ref{fig:aft}).
 \begin{figure}
 \begin{center}
 \includegraphics[width=\linewidth]{Shankarappa_allele_freqs_trajectories_syn_nonsynp8}
-\caption{Allele frequency trajectories of typical patient, C3-V5, nonsynonymous
+\caption{Allele frequency trajectories of typical patient, C2-V5, nonsynonymous
 (solid) and synonymous mutations (dashed lines). Most synonymous mutations are
-not fixed. Colors are set according to the position of the site along the C3-V5
+not fixed. Colors are set according to the position of the site along the C2-V5
 region (red to blue). Data from Ref.~\cite{shankarappa_consistent_1999}.}
 \label{fig:aft}
 \end{center}
@@ -179,7 +179,7 @@ generations), hence much longer than five years for HIV~\citep{boltz_ultrasensit
 \subfloat{\includegraphics[width=0.49\linewidth]{Bunnik2008_fixmid_syn_ShankanonShanka}}
 \subfloat{\includegraphics[width=0.49\linewidth]{Shankarappa_fixmid_syn_V_regions}}
 \caption{Left panel: fixation probability of derived synonymous alleles is strongly
-suppressed in C3-V5 versus other parts of the {\it env} gene, and of
+suppressed in C2-V5 versus other parts of the {\it env} gene, and of
 nonsynonymous ones.
 Right panel: especially hard is fixation of new alleles in conserved regions flanking the V
 loops. The black dashed line is the prediction from neutral